Package: singleRcapture 0.2.2
Maciej Beręsewicz
singleRcapture: Single-Source Capture-Recapture Models
Implementation of single-source capture-recapture methods for population size estimation using zero-truncated, zero-one truncated and zero-truncated one-inflated Poisson, Geometric and Negative Binomial regression as well as Zelterman's and Chao's regression. Package includes point and interval estimators for the population size with variances estimated using analytical or bootstrap method. Details can be found in: van der Heijden et all. (2003) <doi:10.1191/1471082X03st057oa>, Böhning and van der Heijden (2019) <doi:10.1214/18-AOAS1232>, Böhning et al. (2020) Capture-Recapture Methods for the Social and Medical Sciences or Böhning and Friedl (2021) <doi:10.1007/s10260-021-00556-8>.
Authors:
singleRcapture_0.2.2.tar.gz
singleRcapture_0.2.2.zip(r-4.5)singleRcapture_0.2.2.zip(r-4.4)singleRcapture_0.2.2.zip(r-4.3)
singleRcapture_0.2.2.tgz(r-4.5-any)singleRcapture_0.2.2.tgz(r-4.4-any)singleRcapture_0.2.2.tgz(r-4.3-any)
singleRcapture_0.2.2.tar.gz(r-4.5-noble)singleRcapture_0.2.2.tar.gz(r-4.4-noble)
singleRcapture_0.2.2.tgz(r-4.4-emscripten)singleRcapture_0.2.2.tgz(r-4.3-emscripten)
singleRcapture.pdf |singleRcapture.html✨
singleRcapture/json (API)
NEWS
| # Install 'singleRcapture' in R: |
| install.packages('singleRcapture', repos = c('https://ncn-foreigners.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ncn-foreigners/singlercapture/issues
- carcassubmission - British farm carcass submissions data
- farmsubmission - British farm submissions data
- netherlandsimmigrant - Data on immigration in the Netherlands
Last updated 2 days agofrom:aa542f8614. Checks:7 OK, 1 FAILURE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 30 2025 |
| R-4.5-win | OK | Jan 30 2025 |
| R-4.5-mac | OK | Jan 30 2025 |
| R-4.5-linux | OK | Jan 30 2025 |
| R-4.4-win | OK | Jan 30 2025 |
| R-4.4-mac | OK | Jan 30 2025 |
| R-4.3-win | OK | Jan 30 2025 |
| R-4.3-mac | OUTDATED | Jan 21 2025 |
Exports:chaocontrolMethodcontrolModelcontrolPopVardfpopsizeestimatePopsizeestimatePopsizeFitHurdleztgeomHurdleztnegbinHurdleztpoissonmarginalFreqoiztgeomoiztnegbinoiztpoissonpopSizeEstredoPopEstimationstratifyPopsizezeltermanzotgeomzotnegbinzotpoissonztgeomztHurdlegeomztHurdlenegbinztHurdlepoissonztnegbinztoigeomztoinegbinztoipoissonztpoisson
Dependencies:codetoolsdoParallelforeachiteratorslamWlatticemathjaxrRcppRcppParallelsandwichzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| British farm carcass submissions data | carcassubmission |
| Family functions in singleRcapture package | chao Hurdleztgeom Hurdleztnegbin Hurdleztpoisson oiztgeom oiztnegbin oiztpoisson singleRmodels zelterman zotgeom zotnegbin zotpoisson ztgeom ztHurdlegeom ztHurdlenegbin ztHurdlepoisson ztnegbin ztoigeom ztoinegbin ztoipoisson ztpoisson |
| Confidence Intervals for Model Parameters | confint.singleRStaticCountData |
| Control parameters for regression | controlMethod |
| Control parameters specific to some models | controlModel |
| Control parameters for population size estimation | controlPopVar |
| Heteroscedasticity-Consistent Covariance Matrix Estimation for singleRStaticCountData class | bread.singleRStaticCountData estfun.singleRStaticCountData vcovHC.singleRStaticCountData |
| Single-source capture-recapture models | estimatePopsize estimatePopsize.default |
| Regression fitting in single-source capture-recapture models | estimatePopsizeFit |
| British farm submissions data | farmsubmission |
| Observed and fitted marginal frequencies | marginalFreq |
| Data on immigration in the Netherlands | netherlandsimmigrant |
| Diagnostic plots for regression and population size estimation | plot.singleRStaticCountData |
| Extract population size estimation results | popSizeEst popSizeEst.singleRStaticCountData |
| Predict method for singleRStaticCountData class | predict.singleRStaticCountData |
| Updating population size estimation results | redoPopEstimation redoPopEstimation.singleRStaticCountData |
| Regression diagnostics in singleRcapture | cooks.distance.singleRStaticCountData dfbeta.singleRStaticCountData dfpopsize dfpopsize.singleRStaticCountData hatvalues.singleRStaticCountData influence.singleRStaticCountData regDiagSingleR residuals.singleRStaticCountData rstandard.singleRStaticCountData rstudent.singleRStaticCountData sigma.singleRStaticCountData |
| Generating data in singleRcapture | simulate simulate.singleRfamily simulate.singleRStaticCountData |
| Estimate size of sub populations. | stratifyPopsize stratifyPopsize.singleRStaticCountData |
| Statistical tests of goodness of fit | summary.singleRmargin |
| Summary statistics for model of singleRStaticCountData class. | summary.singleRStaticCountData |
| Obtain Covariance Matrix estimation | vcov.singleRStaticCountData |
